Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP----EYMLSHTCLVREPEKFYQFVTENMY-YPNAVPNVIHKKMAEIETEKDV-TIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVTAKDYLK----SDIHT--DCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKERISLPYPFEMMESDAVKVFEEI
2H2D Chain:A ((3-199))
MKEFLDLLNESRLTVTLTGAGISTPSGIPDF------------NVFDIDFFYSH------PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAEL--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2H2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95815 for 1313 contacts (-73.0/contact) +
2D Compatibility (PS) -19459 + (NN) -10287 + (LL) 4228
1D Compatibility (HY) -17600 + (ID) 3400
Total energy: -142333.0 ( -108.40 by residue)
QMean score : 0.659
(partial model without unconserved sides chains):
PDB file :
Tito_2H2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H2D-query.scw
PDB file :
Tito_Scwrl_2H2D.pdb
: