Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQGD-YPHARYMTFLHD--GLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPGSAFLEINGLASLE------EDESIKERI--WENISKEWFRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
1Y30 Chain:A ((5-113))
---VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADD-GWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGE-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22436 for 591 contacts (-38.0/contact) +
2D Compatibility (PS) -10801 + (NN) -4526 + (LL) 1720
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -42593.0 ( -72.07 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1Y30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y30-query.scw
PDB file :
Tito_Scwrl_1Y30.pdb
: