Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEITIVKGDITEQEVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKATYIIHAVGPIWKDGEHQE-ANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYD-TSIKEIRFVCFDEENLKLYNKLINSEVV
3VFQ Chain:A ((23-221))
--LIVQQGDLARLPVDVVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRLLPGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIAIPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKT---
General information:
TITO was launched using:
RESULT:
Template:
3VFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149054 for 1433 contacts (-104.0/contact) +
2D Compatibility (PS) -19469 + (NN) -16352 + (LL) 800
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -196925.0 ( -137.42 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3VFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VFQ-query.scw
PDB file :
Tito_Scwrl_3VFQ.pdb
: