Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILLVCAAGMSTSLLVTKMKAHATSIGEEIEIEALPVSEASNVVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG
2WWV Chain:D ((4-93))
-KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNK-PVEVIDSLLYGKVDGLGVL--------
General information:
TITO was launched using:
RESULT:
Template:
2WWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73351 for 665 contacts (-110.3/contact) +
2D Compatibility (PS) -9524 + (NN) -1966 + (LL) 1136
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -94105.0 ( -141.51 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_2WWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WWV-query.scw
PDB file :
Tito_Scwrl_2WWV.pdb
: