Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVVQLNNQYINDENLKKRYEAEELRRKNRLM--GWVLIFVMLLFILPTYNLVKSYRTLQERRQEVVKLTKDYQTLTNRTENQKLLAKQLKNPDYVQKYARAKYYFSKTGEMIYPLPDLLPK
2RIV Chain:A ((246-307))
----------------ESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATL--LKMGIQHAYSENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGAMFLEAIPR---------
General information:
TITO was launched using:
RESULT:
Template:
2RIV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3177 for 197 contacts (16.1/contact) +
2D Compatibility (PS) -6423 + (NN) 299 + (LL) 1588
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -6709.0 ( -34.06 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_2RIV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RIV-query.scw
PDB file :
Tito_Scwrl_2RIV.pdb
: