Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNML-----GYYVNNQYDSMFQTQVDTISGMHWDMKK-RQISPQAAGKMM------EAIYYQNGDIVNYLSKTDFDNTRIPKNI--PVKVAHKIGDAYDYKHDAAIV-------YAEQPFIMIIFTDKSSYDDITKIADDVYQVLK |
| 2J8Y Chain:A ((19-272)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NLQQQIQQLVSRQPNL-TAGLYFFNLDSGASLNVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMR------PDLIAPE-AGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRLGGAAELNQQFQEWGLENTVINNPLPDMKGTNTTSPRDLATLMLKIGQGEILSPRSRDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMVYQAFE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J8Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -24890 for 2012 contacts (-12.4/contact) +
2D Compatibility (PS) -24472 + (NN) -758 + (LL) 13352
1D Compatibility (HY) -5200 + (ID) 2900
Total energy: -44868.0 ( -22.30 by residue)
QMean score : 0.296
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