Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYAGKNPLLVGVLKGSVPFMAELLKHIDTHVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
4RQB Chain:A ((10-185))
---NDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
General information:
TITO was launched using:
RESULT:
Template:
4RQB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131211 for 1355 contacts (-96.8/contact) +
2D Compatibility (PS) -19478 + (NN) -8351 + (LL) 488
1D Compatibility (HY) -19600 + (ID) 5150
Total energy: -183302.0 ( -135.28 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_4RQB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RQB-query.scw
PDB file :
Tito_Scwrl_4RQB.pdb
: