Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELIFRIFEMKKTLYITNKLFFANWFVPVIGAVLIQVIGIIVSRRLVVKLLPDDYKFNLYIALLLFVPILASILLFLIYFQKRDFTSLGFTKDNNVLTTISGFITGSLLMFFIYICHWLSGFVEISSSNSFSFGPFFFLFLAYFIQSLTEEILFRGYVMTTVTKFKGSFAGVLCNSMLFSFIHFRNYGITAIALFNLFLLGIIFSILFNMTKNILFVTGVHTTWNFTMGCVLGNKVSGGYSPVSLFRITENSSFALWNGGDFGFEGGVLCSLILVGCLAYFSLESVRVSVRY
4CAD Chain:C ((8-269))
--------NPKLYFLSTFVVTYILWFTGAYLS----------------FSSTYSGIYMLIMLPGLMAPFIISTILIA---KKKDFINRLFNLKL-INLKTIPVVFLLMPAVILLSILLSIPFGGSISQFQFSGGDFVPVLFLLLLAATFEELGWRGYAFDSLQSRYSLFKASILFGIFWSLWH----------FPLIFVNNSYQYEIFNQSIWYGLNFFLSILPMGIIITWMCLKNRKSIILAIIFHFLINLNQELLAITQDTKIIETGVLFLVAAAIILYDKKMFFEK---
General information:
TITO was launched using:
RESULT:
Template:
4CAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205628 for 1898 contacts (-108.3/contact) +
2D Compatibility (PS) -25482 + (NN) -2667 + (LL) 5060
1D Compatibility (HY) -11600 + (ID) 1700
Total energy: -242017.0 ( -127.51 by residue)
QMean score : 0.148
(partial model without unconserved sides chains):
PDB file :
Tito_4CAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CAD-query.scw
PDB file :
Tito_Scwrl_4CAD.pdb
: