Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIAIDAMGGDYAPKAIVEGVNQAISDFSD--IEVQLYGDQKKIEKYLTVTERVSIIHTEEKINSDDEPAKAVRRKKQSSMVLGAKAVKDGVAQAFISAGNTGA--LLAAGLFVVGRIKGVDRPGLMSTMPTLDGVGFDMLDLGANAENTASHLHQYAILGSFYAKNVRGIEVPRVGLLNNGTEET---KGDSLHKEAYELLAAEPSINFIGNIEAR--------------DLMSSVADVVVT-DGFTGNAVLKTMEGTAMSIMGSLKSSIKSGGVKAKLGALLLKDSLYQLKDSMDYSSAGGAVLFGLKAPIVKCHGSSDSKAVYSTLKQVRTMLETQVVDQLVDAFTDE |
| 1YCO Chain:A ((1-275)) | MITVSIA-GGSQ---PEILQLVKKALKEA-EQPLQFIVFDTNENLDT----ENLWKYVHCSDE-----A----------AVAQEAVSLVATGQAQILLK-GIIQTHTLLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATLIEIVENAKEVAQK-LGLHHPKIALLSAAENFNPKMPSSVLAKEVTAHFNDQQEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLFG-------------------------------------HAK-VGGTIVGTKVPVVLTSRSDSTESKFHSLRFAMRQVHHH------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YCO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -99406 for 2107 contacts (-47.2/contact) +
2D Compatibility (PS) -27182 + (NN) -8571 + (LL) 5320
1D Compatibility (HY) -8800 + (ID) 2200
Total energy: -140839.0 ( -66.84 by residue)
QMean score : 0.357
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