Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIYDQIESALDLMTDLEREIACYFMGQPISKDALASTIVTKQLHISQAALTRFAKKCGFKGYREFVFEYLKSHETISQQLYGLQNDNTKKVFMNYQEMVSKSADIIDEEQLLEVSHMIEQADRVYFYGKGSSSLVAKEFKIRLMRLG----VICEALDDTDSFSWTNSIVNDRCLVIAFSLSGNTNSVI-GALKIASSHGAKTVLFTKQPHTIDYAFDKIIQVASARHLDYGNRISPQIPMLIMVDIIYAQFLDINKIEKERIFRETIIQR |
1VIV Chain:A ((17-132)) | ------------------------------------------------------------------------------------------------------SAAYISNEEADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPP---------LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETM |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70494 for 830 contacts (-84.9/contact) +
2D Compatibility (PS) -11967 + (NN) -5215 + (LL) 8960
1D Compatibility (HY) -4800 + (ID) 1850
Total energy: -85366.0 ( -102.85 by residue)
QMean score : 0.377
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