Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQKVHPIGMRVGIIRDWDAKWYA-EKEYADYLHEDLAIRKFINKELADASVSTIEIERAVNKVIVSLHTAKPGMVIGKGGANVDALRGQLNKLTGKQVHINIIEIKQPDLDAHLVGENIARQLEQRVAFRRAQKQAIQRTMRAGAKGIKTQVSGRLNGADIARAEGYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPARKNTKGGK
4WT8 Chain:C ((2-207))
-GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEV-----------
General information:
TITO was launched using:
RESULT:
Template:
4WT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60092 for 1448 contacts (-41.5/contact) +
2D Compatibility (PS) -21850 + (NN) -7481 + (LL) 308
1D Compatibility (HY) -18800 + (ID) 5550
Total energy: -113465.0 ( -78.36 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_4WT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WT8-query.scw
PDB file :
Tito_Scwrl_4WT8.pdb
: