Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKIYHMILCNSDIMKILAIIKSLPLNDCWLCAGTLRNFIWNKLSGINETLTSDIDVVFFDKNISYEETVVLEQQLKDNYPQYDWELKNEFYMNTHSPNTPKYTSSK-DAISKFP------EKCTAVGARLD---------DRNQLELYLPYGEEEILNFIVSPTPYFEEDLLRYNVYLKRVDKKKWNNIWPRLTIIKK |
2LYN Chain:A ((54-120)) | ----------------------------------------------------------------------------------------NRRYMQTHWANYMLWINKKIDALGRTPVVGDYTRLGAEIGRRIDMAYFYDFLKDKNMIPKYLPYMEEINRMRPADVPVKYMG----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LYN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 5673 for 196 contacts (28.9/contact) +
2D Compatibility (PS) -4895 + (NN) 1238 + (LL) 9232
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: 7798.0 ( 39.79 by residue)
QMean score : 0.055
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