Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLEIKNLHVSIEDKEILKGLNLTLKTGEIAAIMGPNGTGKSTLSAAIMGNPNYEVTAGEILFDGEDILELEVDERARLGLFLAMQYPSEVPGITNAEFIRAAMNAGKADDDKISIRQFITK--LDEKMELLGMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPKFALLDEIDSGLDIDALKVVSKGVNEMRGEGFGAMIITHYQRLLNYITPDKVHVMMDGKVVLSGGPELAVRLEKEGYAQIAEELGLEYKEEV
2ZU0 Chain:C ((20-266))
--MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ---------
General information:
TITO was launched using:
RESULT:
Template:
2ZU0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115598 for 1974 contacts (-58.6/contact) +
2D Compatibility (PS) -26255 + (NN) -8121 + (LL) 1020
1D Compatibility (HY) -25600 + (ID) 6300
Total energy: -180854.0 ( -91.62 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_2ZU0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZU0-query.scw
PDB file :
Tito_Scwrl_2ZU0.pdb
: