Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLDMLSYDFMQRALLAVVAISIFAPILGIFLILRRQSLMSDTLSHVSLAGVALG--------VVLGIS--PTWSTIFVVTLAAVVLEY--LRTVYKHYMEISTAILMSMGLAISLIVMS----KAHNVGNVSLEQ---YLFGSIITIGKEQVIALFVIALITFILTILFI-RPMYILTFDEDTAFVDGLPVRTMSILFNVVTGIAIALTIPAAGALLVSTIMVLPASIAMRLGRNFKTVIFLGMLIGFVGMVAGIFLSYYWETPASATITMIFIGIFLLVSLVGLLRKR
1L7V Chain:A ((78-253))
------------------------------------QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRH---LSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQ--SWLMLALIPVLLWICCQSRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKA--
General information:
TITO was launched using:
RESULT:
Template:
1L7V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121240 for 1045 contacts (-116.0/contact) +
2D Compatibility (PS) -16351 + (NN) -7472 + (LL) 5568
1D Compatibility (HY) -14800 + (ID) 2300
Total energy: -156595.0 ( -149.85 by residue)
QMean score : 0.177
(partial model without unconserved sides chains):
PDB file :
Tito_1L7V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L7V-query.scw
PDB file :
Tito_Scwrl_1L7V.pdb
: