Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIATINKNDLIALGFSEGTSKRIIRQGKELLIARGFRVYQNKRIGTIPASIATELLGFDVQNSSLSRG
1PKT Chain:A ((29-49))
-ILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR----------------
General information:
TITO was launched using:
RESULT:
Template:
1PKT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 452 for 82 contacts (5.5/contact) +
2D Compatibility (PS) -2119 + (NN) 515 + (LL) 1884
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -2268.0 ( -27.66 by residue)
QMean score : 0.169
(partial model without unconserved sides chains):
PDB file :
Tito_1PKT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PKT-query.scw
PDB file :
Tito_Scwrl_1PKT.pdb
: