Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINND-RVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPWK---EWRETDKHFDQGNL
4GIE Chain:A ((14-139))
--NCVTLHNSVRMPQLGLGVWRAQDGAETANAVRWAIEAGYRHIDTAYIYSNERGVGQGIRESGVPREEVWVTTKVWNSDQGYEKTLAAFERSRELLGLEYIDLYLIHWPGKKKFVDTWKALEKLYEEKKV
General information:
TITO was launched using:
RESULT:
Template:
4GIE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20496 for 894 contacts (-22.9/contact) +
2D Compatibility (PS) -13067 + (NN) -3600 + (LL) 260
1D Compatibility (HY) -8400 + (ID) 2600
Total energy: -47903.0 ( -53.58 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4GIE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GIE-query.scw
PDB file :
Tito_Scwrl_4GIE.pdb
: