Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQTLKLMFSFLLMLGTMFGISQTVLAQETHQLTIVHLEARDIDRPNPQLEIAPKEGTPIEGVLYQLYQLKSTEDGDLLAHWNSLTITELKKQAQQVFEATTNQQGKATFNQLPDGIYYGLAVKAGEKNRNVSAFLVDLSEDKVIYPKIIWS------TGELDLLKVGVDGDTKKPLAGVVFELYE-----KNGRTPIRVKNGVHSQDIDAAKHLETDSSGHIRISGLIHGDYVLKEIETQSGYQIGQAETAVTIEKSKTVTVTIENKKVPTPKVPSRGGLIPKTGEQQAMALVIIGGILIALALRLLSKHRKHQNKD |
4OQ1 Chain:A ((73-260)) | ------------------------------------------------------------------------------LHSWDENKLSSFKKTS---FEMTF-LENQIEVSHIPNGLYYVRSIIQTDAVSYPAEFLFEMT-DQTVEPLVIVAKKTDTMTTKVKLIKVDQDHNR---LEGVGFKLVSVARDVSAAAVPL-IGEYRYSSSGQVGRTLYTDKNGEIFVTNLPLGNYRFKEVEPLAGYAVTTLDTDVQLVDHQLVTITVVNQKLPRGNVDFMKVDGRTNTSLQGAMFKVMKEESGHYTPVLQNGKEVVVTSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OQ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -39647 for 1074 contacts (-36.9/contact) +
2D Compatibility (PS) -18492 + (NN) 3369 + (LL) 6756
1D Compatibility (HY) -14000 + (ID) 2500
Total energy: -64514.0 ( -60.07 by residue)
QMean score : 0.538
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