Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMKSYE
1NXV Chain:A ((2-119))
-KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRS---------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68528 for 945 contacts (-72.5/contact) +
2D Compatibility (PS) -12740 + (NN) -8950 + (LL) 9364
1D Compatibility (HY) -14800 + (ID) 4900
Total energy: -100554.0 ( -106.41 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1NXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NXV-query.scw
PDB file :
Tito_Scwrl_1NXV.pdb
: