Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEFTFEIVEKLLVLSENEKGWTKELNRVSFNGAPAKFDLRTWSPDHTKMGKGITLSNEEFKVILDAFRK
2LTD Chain:A ((5-66))
---LKFEIIEELIVLSENAKGWRKELNRVSWNDAEPKYDIRTWSPDHEKMGKGITLSEEEFGVLLKELGN
General information:
TITO was launched using:
RESULT:
Template:
2LTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4769 for 379 contacts (12.6/contact) +
2D Compatibility (PS) -6300 + (NN) 1811 + (LL) 284
1D Compatibility (HY) -8800 + (ID) 2250
Total energy: -10486.0 ( -27.67 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_2LTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTD-query.scw
PDB file :
Tito_Scwrl_2LTD.pdb
: