Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKNSTLTKLTRVAILSALCVVLRYAFA-PLPNIQP---ITAIFLITVVLFDLKEGVATVTITMLVSSFLMGFGPWVFLQIISFTLILCLWKFLIYPLTKAVCFGKITEVVLQTFFAGGLGVVYGVIIDTCFAWLYHMPWWTYVLAGLSFNMAHALSTCLFYPLLLPILRRFRNEKIH
2KSF Chain:A ((398-463))
-----QIQGSVVAAALSAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVVATVINVVSFDLFF-----------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45405 for 343 contacts (-132.4/contact) +
2D Compatibility (PS) -6414 + (NN) -4972 + (LL) 10032
1D Compatibility (HY) -5200 + (ID) 300
Total energy: -52259.0 ( -152.36 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_2KSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KSF-query.scw
PDB file :
Tito_Scwrl_2KSF.pdb
: