Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENA--PEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTLDKSYDFVFMDSAKSKYIVFLPQVLKH--LDVGGVVVLDDIFQ-----GGDIAKPI-DEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
4YMH Chain:A ((54-232))
--------------------------------------------------------GSWMIFTARDRKPKRILEIGCYSGYSALAWYEGTRDTKAEIVTLEYSPKMIAASREAFKKYGVGDRVKLIEGPAENTLKTLEGEFDLIFVDANKDGYAGYVKTILDQGLLSANGIILCDNVFARGLTIGPDCAPWLNDHVRPYWNGCGQALDKFSAGLMEDPRIDVLLLPVFDGVTQIRWKDGAQRA--
General information:
TITO was launched using:
RESULT:
Template:
4YMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125482 for 1291 contacts (-97.2/contact) +
2D Compatibility (PS) -18624 + (NN) -11106 + (LL) 4448
1D Compatibility (HY) -13600 + (ID) 2650
Total energy: -167014.0 ( -129.37 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_4YMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMH-query.scw
PDB file :
Tito_Scwrl_4YMH.pdb
: