Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTGASYPKYRFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTI--TGMNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
1KK5 Chain:A ((62-198))
--------------------------------KIGKFCSIGPGVTIIMNGANHRMDG-STYPFNLFGNGWEKHMPKLDQLPIK--GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVI-----------
General information:
TITO was launched using:
RESULT:
Template:
1KK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83623 for 874 contacts (-95.7/contact) +
2D Compatibility (PS) -14917 + (NN) -7888 + (LL) 2680
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -117598.0 ( -134.55 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1KK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KK5-query.scw
PDB file :
Tito_Scwrl_1KK5.pdb
: