Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRESIFEETAKGKVSRHVLLTILLALILLFTADFLTYIIIELIISLDFWKLEWDSD---IVQLIILLATSISTVMLFMWVKFKEK--RPISSLGLFKEGALTELSRGWLVESVLFGACLILTIISGSGVIETVRFTADKLIWFLIFAVGWQVQSASVEILCRGWLLPVSATKYSKIVSVSISSIFFGLLHSANNHVSLISIFNLCLFGLFLSLYVILKGNIWGACGIHGAWNCVQGSVFGIEVSGEPMLSNSLVHVKTYGADWISGGKFGVEGSMITSIVLIVACYWLYQKSNFPYD |
| 1YEW Chain:B ((7-244)) | ---AVRSHAEAVQVSRTIDWMALFVVFFVIVGSYHIHAML-TMGDWDFW-SDWKDRRLWVTVTPIVLVTFPAAVQSYLWERYRLPWGATVCVLGLLLGEWINRYFNFWGWTYFPINFVFPASLVPGAIILDTVLMLSG-----------------------------------SYLFTAIVGAMGWGLIFYPGNWPIIAPL----------HVPVEYNGMLMSIADIQGYNYVRTGTPEYIRMVEKGTL-------RTFGKDVAPVSAFF--SAFMSILIYFMWHFIGRWFSNERFL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YEW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133530 for 1667 contacts (-80.1/contact) +
2D Compatibility (PS) -23033 + (NN) 6201 + (LL) 5876
1D Compatibility (HY) -16400 + (ID) 1850
Total energy: -162736.0 ( -97.62 by residue)
QMean score : 0.101
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