Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQSNHRYHGPLIEFEIEYSYIKIFPWIGLFISCIGLYASNFGDPLGFIKFIFSVCIFVNLVSIIISLFLKKYLIF
2K1A Chain:A ((991-997))
------------------------------------------------------------------GFFKRNR---
General information:
TITO was launched using:
RESULT:
Template:
2K1A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1117 for 14 contacts (79.8/contact) +
2D Compatibility (PS) -636 + (NN) 1376 + (LL) 5712
1D Compatibility (HY) 0 + (ID) 50
Total energy: 7519.0 ( 537.07 by residue)
QMean score : -0.003
(partial model without unconserved sides chains):
PDB file :
Tito_2K1A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K1A-query.scw
PDB file :
Tito_Scwrl_2K1A.pdb
: