Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
2VT2 Chain:A ((11-207))
---------ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG-----YNVDYLLSFFRKTLDQD---DVILIGVGNLGTAFLHY-------TKISMAFDINESKI--GTEVGGVPVYNLDDLEQHVKDESV--AILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS
General information:
TITO was launched using:
RESULT:
Template:
2VT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150350 for 1260 contacts (-119.3/contact) +
2D Compatibility (PS) -19800 + (NN) -10557 + (LL) 1232
1D Compatibility (HY) -22800 + (ID) 4450
Total energy: -206725.0 ( -164.07 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_2VT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT2-query.scw
PDB file :
Tito_Scwrl_2VT2.pdb
: