Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKTIQKELEGLDIRFDEPLKKYTYTKVGGPADYLAFPRNRLELSRIVKFANSQNIPWMVLGNASNIIVRDGGIRGFVI-MFDKLSTVTVNGYVIEAEAGANLIETTRIARYHSLTGFEFACGIPGSVGGAVFMNAGAYGGEIAHILLSAQVLTPQGELKTIEARNMQFGYRHSVIQESGDIVISAKFALKPGDHLMITQEMDRLTYLRELKQPLEYPSCGSVFKRPPGHFAGQLISEAHLKGQRIGGVEVSQKHAGFMVNIAEGSAQDYENLIEHVINTVESTSGVHLEPEVRIIGESLL |
2GQT Chain:A ((11-254)) | -------------------LKDYTTLGVGGPAELWTV-ETREELKR------ATEAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTYDLKGWV---GAGTLLPLLVQEAARAGLSGLEGLLGIPAQVGGAVKMNAGTRFGEMADALEAVEVFH-DGAFHVYCPEELGFGYRKSHLPPGG-IVTRVRLKLKERPKEEILRRMAEVDRARK-GQP-KRKSAGCAFKNPPGQSAGRLIDERGLKGLRVGDAMISLEHGNFIVNLGQARAKDVLELVRRVQEELPLELEWEVWP---------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -132415 for 1958 contacts (-67.6/contact) +
2D Compatibility (PS) -25610 + (NN) -2893 + (LL) 3144
1D Compatibility (HY) -14400 + (ID) 4700
Total energy: -176874.0 ( -90.33 by residue)
QMean score : 0.485
|
|
|