Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVA-------KMYIEMFSGLNQDPKEQFTAVFSENHEEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
1IS8 Chain:A ((47-229))
--NLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLND------AIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNK-QVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRG--KMNSKTVTSTMLGVFREDPKTREEFLTLIRS-
General information:
TITO was launched using:
RESULT:
Template:
1IS8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67608 for 1282 contacts (-52.7/contact) +
2D Compatibility (PS) -19768 + (NN) -11242 + (LL) 560
1D Compatibility (HY) -17600 + (ID) 4700
Total energy: -120358.0 ( -93.88 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1IS8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IS8-query.scw
PDB file :
Tito_Scwrl_1IS8.pdb
: