Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRS----LEEAQEIDLSKFDSVDIIEWRADALPK-DDIINVAPAIFE-KFAGHEI--IFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
4H3D Chain:A ((21-253))
-KICVPIIGKNKKDIIKEAKEL---KDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAK---APGQISFKELNSVLNLLHKS
General information:
TITO was launched using:
RESULT:
Template:
4H3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105235 for 1683 contacts (-62.5/contact) +
2D Compatibility (PS) -24174 + (NN) -16952 + (LL) 428
1D Compatibility (HY) -21600 + (ID) 4150
Total energy: -171683.0 ( -102.01 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_4H3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3D-query.scw
PDB file :
Tito_Scwrl_4H3D.pdb
: