Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTMLKVENLSIHYGVIQAVNDVSFEVNQGEVVTLIGANGTGKTSILRTISGLVRPSQGSISFMGKPIHKLAARKIVGNGLAQVPEGRHVFSSLSVMENLEMGA-----------FLQKDREQNQKMLKKVFD--RFPRLEERKNQDAATLSGGEQQMLAMGRALMSRPKLLLLDEPSMGLAPIFIQEIFNIIEDIKKQGTTVLLVEQNANKALTIADKAYVLETGKVVLSGTGKE----LLVSDQVRKAYLGG |
1GAJ Chain:A ((5-256)) | MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYIGE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118887 for 1851 contacts (-64.2/contact) +
2D Compatibility (PS) -25153 + (NN) -7328 + (LL) 0
1D Compatibility (HY) -21600 + (ID) 3700
Total energy: -176668.0 ( -95.44 by residue)
QMean score : 0.530
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