Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRIQKNILREFEMESSEQALAIWSVLSDVYDKSPWSLSQISEDLKKDSTDYFFVYNDGEVIGFLA------------LQQLVGEVEITNIAVKKNYQGKGYAYQLM-----SMIADIEVP-VFLEVRYSNIVAQKLYERCGFVVLGKRKNYYHDPIEGAIVMRKG
4LX9 Chain:A ((44-165))
------------------------------------------EHLKEYGLAFFVAIVDNSVVGYIMPRIEWGFSNIKQLPSLVRKGHVVSIAVLEEYRRKGIATTLLEASMKSMKNDYNAEEIYLEVRVSNYPAIALYEKLNFKKVKVLKGYYADGEDAYLMARPL
General information:
TITO was launched using:
RESULT:
Template:
4LX9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61556 for 630 contacts (-97.7/contact) +
2D Compatibility (PS) -11342 + (NN) -3349 + (LL) 3716
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -84781.0 ( -134.57 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_4LX9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LX9-query.scw
PDB file :
Tito_Scwrl_4LX9.pdb
: