Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIFDTHTHLNVENFEGKIDEEINLASELGVTKMNVVGFDQDTISKSLELSSQYAQVYSTIGWHPTEAGSYDD-NIESMIISHLENP-KVIALGEIGLDYYWMEDPK-DIQIEVFKRQIELSKEYNLPFVVHTRDALEDTYEVIKESGVGPFGGIMHSFSGSLEMAQKFIDLGMMISFSGVVTFKKALDVQEAARELPLDKILVETDAPYLAPVPKRGRENKTAYTRYVVEKIAELRGITVEEVAEATYQNAVRIFRLDEKN
1ZZM Chain:A ((2-256))
ICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEIGLDLFG-DDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDL-PRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP---
General information:
TITO was launched using:
RESULT:
Template:
1ZZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122348 for 2222 contacts (-55.1/contact) +
2D Compatibility (PS) -27357 + (NN) -12585 + (LL) 236
1D Compatibility (HY) -15600 + (ID) 3900
Total energy: -181554.0 ( -81.71 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZM-query.scw
PDB file :
Tito_Scwrl_1ZZM.pdb
: