Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQFLKDNFSLEGKVALITGASYGIGFSIATAFARAGATIVFNDIKQELVDKGISAYKKLGIKAHGYVCDVTDEDGINEMVDKISQDVGVIDILVNNAGIIKRTPMLEMSAADFRQVIDIDLNAPFIVSKAVLPGMIQKGHGKIINICSMMSELGRETVAAYAAAKGGLKMLTKNIASEYGSANIQCNGIGPGYIATPQTAPLRERQDDGSRHPFDQFIIAKTPAARWGEAEDLGAPAIFLASDASNFINGHILYVDGGILAYIGKQPQ
4Z9X Chain:A ((3-264))
-------NMFSLQGKIALITGASYGIGFEIAKAYAQAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEAGIQQMVSQIEDEVGAIDILVNNAGIIRRTPMLEMAAEDFRQVIDIDLNAPFIVSKAVLPSMIAKGHGKIINICSMMSELGRETVSAYAAAKGGLKMLTKNIASEFGEANIQCNGIGPGYIATPQTAPLRER-----RHPFDQFIIAKTPAARWGTTEDLAGPAVFLASDASNFVNGHILYVDGGILAYIGKQP-
General information:
TITO was launched using:
RESULT:
Template:
4Z9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164424 for 2145 contacts (-76.7/contact) +
2D Compatibility (PS) -27023 + (NN) -3469 + (LL) 744
1D Compatibility (HY) -35200 + (ID) 11050
Total energy: -240422.0 ( -112.08 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_4Z9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Z9X-query.scw
PDB file :
Tito_Scwrl_4Z9X.pdb
: