Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
4U82 Chain:A ((19-253))
-----------LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYP----DPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGL
General information:
TITO was launched using:
RESULT:
Template:
4U82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102457 for 1847 contacts (-55.5/contact) +
2D Compatibility (PS) -25563 + (NN) -13817 + (LL) 1844
1D Compatibility (HY) -23600 + (ID) 6500
Total energy: -170093.0 ( -92.09 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4U82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U82-query.scw
PDB file :
Tito_Scwrl_4U82.pdb
: