Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLTLVYISLSG-NTQSFVKRLSEQLSTWHNCQVSTINIKEQNHQTFPVDQPFVALLPTYLEGGNGIDNGDQEILTIPLGDFIAAHNNVKNCIGIVGSGNRNFNNQYCLTAKQYSERFGFPMLGDFELRGTSSDVERIANIIVETLSNFKA
3N3B Chain:C ((24-147))
-----LVYFSSSSENTQRFIERLG----------LPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVI------RFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQR---
General information:
TITO was launched using:
RESULT:
Template:
3N3B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73480 for 924 contacts (-79.5/contact) +
2D Compatibility (PS) -13145 + (NN) -1326 + (LL) 1576
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -98925.0 ( -107.06 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3N3B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3B-query.scw
PDB file :
Tito_Scwrl_3N3B.pdb
: