Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQKF-GFPMINE------IVEDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
2A2Z Chain:A ((27-245))
------ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGK----EKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
2A2Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87775 for 1405 contacts (-62.5/contact) +
2D Compatibility (PS) -20446 + (NN) -10366 + (LL) 1024
1D Compatibility (HY) -18000 + (ID) 2750
Total energy: -138313.0 ( -98.44 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_2A2Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A2Z-query.scw
PDB file :
Tito_Scwrl_2A2Z.pdb
: