Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIY--------------INDHYGLWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
3TB4 Chain:A ((26-204))
---ASRAVLLIHDMQEYFVHYFDSQAEPIPSLIKHIQQLKAHAKQAGIPVVYTAQPANQDPAERALLSDFWG------PGLSEETA------IIAPLAPESGDVQLTKWRYSAFKKSPLLDWLRETGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIGDGVADFSLSDHEFSLRYISGRTGAVKSTQQACLE-
General information:
TITO was launched using:
RESULT:
Template:
3TB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120342 for 1289 contacts (-93.4/contact) +
2D Compatibility (PS) -17544 + (NN) -3700 + (LL) 1116
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -154170.0 ( -119.60 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_3TB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TB4-query.scw
PDB file :
Tito_Scwrl_3TB4.pdb
: