Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLTTQFYTMLAMSGMGLWLGASLDTYRLFVIRAKTARWLLFIHDILFWIMQGLLFFYVLLHVNEGEFRIYIFLAVLLGVATYQSLCKRIYIKILKFVIYLVVSVYQFFKKLIQHVLFRPIVWTCGAIIWLAAFLFKKTYSLIGFLLLCLYKIVMVLCFPIRFIAKQCLKLLPVKMRLTFRRYFEKGAGFLKKKKKLLITIRTTITRFLKR |
| 1V54 Chain:K ((37-54)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------GIEWNPSPVGRVTPKEWR---------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1V54.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 1483 for 45 contacts (33.0/contact) +
2D Compatibility (PS) -1595 + (NN) 858 + (LL) 21364
1D Compatibility (HY) -400 + (ID) 150
Total energy: 21560.0 ( 479.11 by residue)
QMean score : -0.124
|
|
|