Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVK-QEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQ-DLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
4NAL Chain:A ((4-226))
-SVSVILLAGG---------PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEY--EESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKT----TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLK-HPVYVSQGSYTNIKVTTPDDLLLAERILSE-------
General information:
TITO was launched using:
RESULT:
Template:
4NAL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122746 for 1629 contacts (-75.4/contact) +
2D Compatibility (PS) -22661 + (NN) -9940 + (LL) 1144
1D Compatibility (HY) -19200 + (ID) 3900
Total energy: -177303.0 ( -108.84 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4NAL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAL-query.scw
PDB file :
Tito_Scwrl_4NAL.pdb
: