Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMKFFKDVGKEMKKVSWPKGKELTRYTITVISTVIFFVIFFALLDTGISQLIRLIVE
2ZQP Chain:E ((12-57))
---------ARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIG----
General information:
TITO was launched using:
RESULT:
Template:
2ZQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7917 for 170 contacts (-46.6/contact) +
2D Compatibility (PS) -4436 + (NN) 977 + (LL) 1712
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -15014.0 ( -88.32 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_2ZQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZQP-query.scw
PDB file :
Tito_Scwrl_2ZQP.pdb
: