Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLDK
4WF9 Chain:R ((2-99))
-HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGE----
General information:
TITO was launched using:
RESULT:
Template:
4WF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 7140 for 562 contacts (12.7/contact) +
2D Compatibility (PS) -10645 + (NN) -3169 + (LL) 564
1D Compatibility (HY) -8000 + (ID) 3500
Total energy: -17610.0 ( -31.33 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_4WF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WF9-query.scw
PDB file :
Tito_Scwrl_4WF9.pdb
: