Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDSMIIGKYVPGTSLVHRLDPRTKLITIFLFVCIVFLANNVQTYALLG-LFTIGVVSLTRVPFSFLMKGLKPIIWIVLFTFLLHILMTHEGPIIFQIGFFKVYEGGLVQGIFISLRFVYLILITTLLTLTTTPIEITDGMEQLLNPLKKLKLPVHELALMMSISLRFIPTLMEETDKIMKAQMARGVDFTSGPVKERVKAIVPLLVPLFVSAFKRAEELAVAMEARGYQGGEGRTKYRKLVWTGKDTSVIVSLIVLAALLFFLRA
4HUQ Chain:T ((6-262))
------FGRYLPLDSVVHRLDPRAKLMLSFCYIIVVFLANN-IWSYAILIAFTVGAILSSKISLGFFLKGIRPLLWLIVFTVVLQLLFS-----------INVTQDGLINAGYIFVRFLLIIMMSTLLTLSTQPLDIATGLASLMKPLRWVKVPVDTLAMMLSIALRFVPTLMDEATKIMNAQRARGVDFGEGGLFKQAKSLIPLMVPLFMSAFNRAEDLSTAMEARGYQDSEHRSQYRILTWQRRDTVTWLLFLLGFVAILI---
General information:
TITO was launched using:
RESULT:
Template:
4HUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152670 for 1501 contacts (-101.7/contact) +
2D Compatibility (PS) -25772 + (NN) -13570 + (LL) 1996
1D Compatibility (HY) -35600 + (ID) 5450
Total energy: -231066.0 ( -153.94 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_4HUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HUQ-query.scw
PDB file :
Tito_Scwrl_4HUQ.pdb
: