Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIYLDPGHGGPDGGAVGGK-LLEKDVTLEVAFRVRDYLQE-QGALVIMTRESDTDLAPEGTKGYSRRKAEDLRQRVKLINHSEAELYISIHLNAIPSQKWSGAQSFYYGKYAENEKVAKYIQD--------------ELRRNLENTTRKAKRIHGIYLMQNVTK---------------------------PGALIEVGFLSNPSEATLLGKPKYQDKVASSIYKGILRYFTEKGDPPE |
| 3NE8 Chain:A ((7-225)) | ------------------------------------------VVLDPGHGGIDGGARGVTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFLR--------------LSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTISDEA-SDAIAKSLAESENKVDLLDGLPKE---DILLDLTRRETHAFSINFANNVVSNLSKSHINLINNPHRYADFQVLKAPDVPSVLIEIGYLSNKEDEKLLNNPQWRKQMAASIAYSI-RQFAE------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NE8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72319 for 1298 contacts (-55.7/contact) +
2D Compatibility (PS) -18254 + (NN) -9343 + (LL) 3764
1D Compatibility (HY) -10800 + (ID) 3500
Total energy: -110452.0 ( -85.09 by residue)
QMean score : 0.520
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