Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGSLSEHKAGNRRFTLYLPPSYSTDSGGFPAVYVQDG-----SSLFQNQIEL---LESAFQQQRLPELVLIGIEPENRLDEYTPWPAASLSDRFTDFGGMGYHYLSDITNQFIPLIEENWNVTRE---PQS-------RGMIGASLGGLISMFAILKYPSMFGKIGSISGSYWYENA--------AETIHISSLKPGTARVFMSIGSEEGREKQSIQRHMLKKTKQVHQSLKEKGFTED----QLCLSIEKGAVHHHKYFCKQFINALEWLYGKNRSTL
1GKL Chain:A ((51-287))
----------GTKSLNVYLPYGYDPNKK-YNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVV-----------TP--------TFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSED------IAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDALPYFF-------
General information:
TITO was launched using:
RESULT:
Template:
1GKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140654 for 1671 contacts (-84.2/contact) +
2D Compatibility (PS) -21797 + (NN) -5072 + (LL) 1468
1D Compatibility (HY) -20400 + (ID) 2750
Total energy: -189205.0 ( -113.23 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1GKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GKL-query.scw
PDB file :
Tito_Scwrl_1GKL.pdb
: