Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATGGLAIIQSMKHKLPPSERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK |
| 1VIM Chain:A ((25-138)) | -----------------------------------------------------------------------------------------------------------IKNLRNHIDLETVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLM--HLGYTVYVVGETVTPRITD---QDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVM--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60628 for 872 contacts (-69.5/contact) +
2D Compatibility (PS) -12458 + (NN) -5812 + (LL) 12812
1D Compatibility (HY) -8000 + (ID) 1550
Total energy: -75636.0 ( -86.74 by residue)
QMean score : 0.435
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