Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSINNGHKESHDHRISNDAEMITDEKWQAIINNDAAYNNQFFYAVKSTGIFCKPSCKSRVPKKENVCIFPNTEQALRANFRPCKRCKPTNEKMPDSEWVDLITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAKKYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKMEETYNGNK
1D5Y Chain:A ((7-107))
-----------------------------------------------------------------------------------------------------DLLI-WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRR------------
General information:
TITO was launched using:
RESULT:
Template:
1D5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48813 for 624 contacts (-78.2/contact) +
2D Compatibility (PS) -10269 + (NN) -2422 + (LL) 5792
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -62762.0 ( -100.58 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_1D5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D5Y-query.scw
PDB file :
Tito_Scwrl_1D5Y.pdb
: