Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQNDFTFPSDTYLLLYFWSMSCPNCHQLTDKV--LQDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2B5Y Chain:A ((1-138))
MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGM-KMLEK----
General information:
TITO was launched using:
RESULT:
Template:
2B5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88995 for 1028 contacts (-86.6/contact) +
2D Compatibility (PS) -14347 + (NN) -5929 + (LL) 276
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -115495.0 ( -112.35 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_2B5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B5Y-query.scw
PDB file :
Tito_Scwrl_2B5Y.pdb
: