Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKTFVKKAMLTTAAMTSAALLTFGPDAASAKTPVDNTAVQLQHQASTNEDLNTFIDILNQCIYEQDGVYYFDSEKAVELGMTKEEAQVIATLWESTSEFFSIVSQCVYLEDGNYKFDTEKAVELGFTEKEALALEQFFSAVSLKIHILQAAIVLQDDVYSYDKDAALQAGATPLQADVYEKLFSALSQEQLAAIYDMIHPQA
1NKZ Chain:B ((2-20))--------------------------------------------------------------------------------TLTAEQSEELHKYVIDGTR--------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1NKZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 9 -763 -84.78 -40.16
target 2D structure prediction score : 0.84
Monomeric hydrophicity matching model chain B : 0.52

3D Compatibility (PKB) : -84.78
2D Compatibility (Sec. Struct. Predict.) : 0.84
1D Compatibility (Hydrophobicity) : 0.52
QMean score : 0.710

(partial model without unconserved sides chains):
PDB file : Tito_1NKZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NKZ-query.scw
PDB file : Tito_Scwrl_1NKZ.pdb: