Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMENKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLCGDAADKCPMTPPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETGK
2IPA Chain:B ((1-139))MENKIIYFLSTGNSARSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLSGDAADKCPMTPPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEFAETGK


General information:
TITO was launched using:
RESULT:

Template: 2IPA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 722 -33987 -47.07 -244.51
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain B : 1.00

3D Compatibility (PKB) : -47.07
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 1.00
QMean score : 0.624

(partial model without unconserved sides chains):
PDB file : Tito_2IPA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2IPA-query.scw
PDB file : Tito_Scwrl_2IPA.pdb: