Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGGMALTGNKAVVYKGKGTVAVEDIGYPELILRDGPGVPKANVNRKCEHGV--ILKVITTNICGSDQHMVRGRTTAPEGLVLGHEITGEVIETGRDVEFIKKGDIVSVPFNIACGRCVMCKTQKTHVCLNVNPDRPGSAYGYVDM-GGWVGGQSEYVMVPYADFQLLVFPDKEQALEKILDLTMLSDIFPTGFHGAYTAGVQTGSTVYIAGAGPVGLAAAHSAQLLGASTVIVGDLNEDRLAQARSFGCETVNVQKHDRLGEQIEQILGEPTVDAAVDCVGFEASGHGNQGEAPAAVLNSIMDVTQVGGSLGIPGLYVTEDPGAKDADAKTGSLKIRFGLGWAKAHTFVTGQTPAMTYNRNLMKAILSGRAQIAKAVNATVISLDDAPKGYSDFDKGAAKKFVIDPHGTLK
4CPD Chain:A ((2-343))---------RAVVFENKERVAVKEVNAPRL-----------------QHPLDALVRVHLAGICGSDLHLYHGKIPVLPGSVLGHEFVGQVEAVGEGIQDLQPGDWVVGPFHIACGTCPYCRRHQYNLC-----ER-GGVYGYGPMFGNLQGAQAEILRVPFSNVNLRKLPPNLSPERAIFA----GDILSTAYGGLIQGQLRPGDSVAVIGAGPVGLMAIEVAQVLGASKILAIDRIPERLERAASLGAIPINAEQEN----PVRRVRSE-TNDEGPDLV-LEAVGG-------AATLSLALEMVRPGGRVSAVG--VDNAP----------SFPFPLASGLVKDLTFRIGLANVHLYIDAVLALLASGRLQPERIV-SHYLPLEEAPRGYELFDRKEALKVLL-------


General information:
TITO was launched using:
RESULT:

Template: 4CPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2119 -84112 -39.69 -248.12
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -39.69
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.503

(partial model without unconserved sides chains):
PDB file : Tito_4CPD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4CPD-query.scw
PDB file : Tito_Scwrl_4CPD.pdb: