Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEHARPTALNDGVLSVIAESTAWATQLRIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG
3VTF Chain:A ((349-410))
--------------------------------------------------------------------DVRESR--GVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVII-ATAW------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VTF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10113 for 389 contacts (-26.0/contact) +
2D Compatibility (PS) -6684 + (NN) -3336 + (LL) 5896
1D Compatibility (HY) -4000 + (ID) 1100
Total energy: -19337.0 ( -49.71 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_3VTF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VTF-query.scw
PDB file :
Tito_Scwrl_3VTF.pdb
: